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Publications from 2008

Solution Titration by Wall Deprotonation During Capillary Filling of Silicon Oxide Nanochannels

Janssen KGH, Hoang HT, ,Floris J, De Vries J, Tas NR, Eijkel JCT, Hankemeier T

Date of publication: 11/2008

Exploring and exploiting carotenoid accumulation in Dunaliella salina for cell-factory applications

Packo P. Lamers, Marcel Janssen, Ric C.H. De Vos, Raoul J. Bino and Rene H. Wijffels

Date of publication: 11/2008

Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

Butelli, E., TIitta, L., Georgio, M., Mock, H-P.,Matros, A., Peterek, S., Schijlen, E.G.W.M., Hall, R.D., Bovy, A.G., Martin, C.A.

Date of publication: 11/2008

RPLC-FTMS Method for Lipid Profiling of Plasma: Method Validation and Application to p53 mutant Mouse Model

Hu C., VAn Dommelen J., Van der Heijden R., Spijksma G., Reijmers T.H., Wang M., Xu G., Slee E., Lu X., Van der Greef J., Hankemeier T.

Date of publication: 10/2008

The peptidyl-isomerase Pin1 regulates p27Kip1 expression through inhibition of FOXO tumorsuppressors.

Brenkman AB, de Keizer PLJ, van den Broek NJF, van der Groep P, van Diest PJ, van der Horst A, Smits AMM, Burgering BMT

Date of publication: 09/2008

Lipodomic approach to evaluate rosuvastatin and atorvastatin at various dosages: investigating defferential effects among statins

Bergheanu S.C., Reijmers T., Zwinderman A.H., Bobeldijk I., Ramaker R., Liem A.H., Van der Greef J., Hankemeier T., Jukema J.W.

Date of publication: 08/2008

Multilevel data analysis of a cross-over designed human nutritional study

E.J.J. van Velzen, J.A. Westerhuis, J.P.M. van Duynhoven, F.A. van Dorsten, H.C.J. Hoefsloot, D.M. Jacobs, S. Smit, R. Draijer, C.I. Kroner and A.K. Smilde

Date of publication: 08/2008

Discriminant Q2 (DQ2) statistic for improved discrimination in PLSDA models

J.A. Westerhuis, E.J.J. van Velzen, H.C.J. Hoefsloot and A.K. Smilde

Date of publication: 08/2008

Predicting sub-Golgi localization of type ii membrane proteins

Van Dijk, A. D. J., Bosch, D., ter Braak, C. J. F., van der Krol, A. R. and van Ham, R. C. H. J.

Date of publication: 08/2008

Stress-induced biosynthesis of dicaffeoylquinic acids in globe artichoke

Moglia A, Lanteri S, Comino C, Acquadro A, de Vos R, Beekwilder J.

Date of publication: 08/2008

The geometry of ASCA

A.K. Smilde, H.C.J. Hoefsloot and J.A. Westerhuis

Date of publication: 07/2008

Flavour metabolomics - Holistic versus targeted profiling in flavour research

De Vos, R.C.H., Y. Tikunov, A.G. Bovy & R.D. Hall.

Date of publication: 07/2008

Coffee chemometrics as a new concept: Untargeted metabolic profiling of coffee

Lindinger, C., R.C.H De Vos, C. Lambot, P. Pollien, A. Rytz, E. Voirol-Baliguet, R. Fumeaux, F. Robert, C. Yeretzian & I. Blank

Date of publication: 07/2008

The impact of the absence of aliphatic glucosinolates on insect herbivory in Arabidopsis.

Beekwilder, J., Van Leeuwen, W., Van Dam, N.M., Bertossi, M., Grandi, V., Mizzi, L., Soloviev, M., Szabados, L., Molthoff, J.W., Schipper, B., Verbocht, H., De Vos, R.C.H., Morandini, P., Aarts, M.G.M., Bovy, A.G.

Date of publication: 04/2008

Comprehensive analysis of the metabolome of Pseudomonas putida S12 grown on different carbon sources

Van der Werf MJ, Overkamp KM, Muilwijk B, Koek MM, van der Werff-van der Vat BJ, Jellema RH, Coulier L, Hankemeier T

Date of publication: 04/2008

Similarities and differences in lipidomics profiles among healthy monoygotic twin pairs

Draisma H.H.M., Reijmers T.H., Bobeldijk-Pastorova I., Meulman J.J., Estourgie-van Burk G.F., Bartels M., Ramaker R., Van der Greef J., Boomsma D.I., Hankemeier T.

Date of publication: 03/2008

Higher mass loadability in GCxGC-MS: improved analytical performance for metabolomics analysis

Koek M, Muilwijk B, Van Stee LLP, Hankemeier T

Date of publication: 01/2008

Parafasca: ASCA combined with Parafac for the analysis of metabolic fingerprinting data

J.J. Jansen, R. Bro, H.C.J. Hoefsloot, F.W.J. van den Berg, J.A. Westerhuis and A.K. Smilde

Date of publication: 01/2008

Assessment of PLSDA cross validation

J.A. Westerhuis, H.C.J. Hoefsloot, S. Smit, D.J. Vis, A.K. Smilde, E.J.J. van Velzen, J.P.M. van Duijnhoven and F.A. van Dorsten

Date of publication: 01/2008

Simplivariate models: ideas and first results

J.A. Hageman, M.M.W.B. Hendriks, J.A. Westerhuis, M.J. van der Werf, R. Berger and A.K. Smilde

Date of publication: 01/2008

Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control

Van Dijk, A.D.J., ter Braak, C.J.F. Immink, G..H., Angenent, G.C., van Ham, R.C.H.J.

Date of publication: 01/2008

Bootstrap Confidence Intervals for Principal Response Curves

Timmerman, M. E. & ter Braak, C. J. F.

Date of publication: 01/2008

Plant metabolomics applications in the Brassicaceae: added value for science and industry

Hall, R.D., De Vos, R.C.H., Ward, J.L.

Date of publication: 01/2008

Tomato strigolactones are derived from carotenoids and their biosynthesis is promoted by phosphate starvation

Juan Antonio L

Date of publication: 01/2008

Accurate mass error correction in liquid chromatography time-of-flight mass spectrometry based metabolomics

Mihaleva, V.V., Vorst, O., Maliepaard, C., Verhoeven, H.A., De Vos, C.H.R., Hall, R.D., van Ham, R.C.H.J.

Date of publication: 01/2008

Plant metabolomics and its potential for human nutrition

Hall, R.D., Brouwer, I., Fitzgerald, M.E.

Date of publication: 01/2008

Boosting beneficial phytochemicals in vegetable crop plants

Schijlen, E.G.W.M., Beekwilder, J., Hall, R.D., van der Meer, I.M.

Date of publication: 01/2008

Changes in Antioxidant and Metabolite Profiles during Production of Tomato Paste

Esra Capanoglu, Jules Beekwilder, Dilek Boyacioglu, Robert Hall and Ric de Vos

Date of publication: 01/2008

Antioxidants, Phenolic Compounds, and Nutritional Quality of Different Strawberry Genotypes

Tulipani S, Mezzetti B, Capocasa F, Bompadre S, Beekwilder J, De Vos RCH, Capanoglu E, Bovy A, Battino M.

Date of publication: 01/2008

Plant Metabolomics and its potential for human nutrition

Hall, R.D., Brouwer, I., Fitzgerald, M.E.

Date of publication: 01/2008

1H NMR metabolite profiling of faeces as a tool to assess the impact of nutrition on the human microbiome

Jacobs, D., Deltimple, N., Velzen, E. van, Bingham, M., Vaughan, E., Bingham, M., Duynhoven, J

Date of publication: 01/2008

GC–MS methods for metabolic profiling of microbial fermentation products of dietary polyphenols in human and in vitro intervention studies

Grun, C., Dorsten, F. van, Jacobs, D., Le Belleguic, M., Velzen, E. van, Bingham, M., Janssen, H.G., Duynhoven, J. van

Date of publication: 01/2008

Multilevel data analysis of a human nutritional crossover designed study

Velzen, E. van, Westerhuis, J, Duynhoven, J. van Dorsten, F. van, Hoefsloot, H., Smit, S., Draijer, R., Kroner, C.I., Smilde, A.K.

Date of publication: 01/2008

Assessment of PLSDA crossvalidation

Westerhuis, J., Hoefsloot, H., Smit, S., Vis, D., Smilde, A., Velzen, E. van, Duynhoven, J. van, Dorsten, F. van

Date of publication: 01/2008