Plant associate projects

Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus

Type of publication: 
Matching Publication
Authors: 
J. Beekwilder, D. Marcozzi, S. Vecchi, R.C.H. de Vos, P. Janssen, C. Francke, J. van Hylckama Vlieg, R.D. Hall
Authors from the NMC: 
Published in: 
Applied and Environmental Microbiology
Date of publication: 
2009/06
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics
Pages: 
2009;75 (11): 3447-3454
DOI: 
10.1128/AEM.02675-08
Publication data (text): 
2009

Identification of a quality marker of the fermented off-note in coffee by a non-targeted chemometric approach

Type of publication: 
Matching Publication
Authors: 
C. Lindinger, P. Pollien, R.C.H. de Vos, Y. Tikunov, J.A. Hageman, C. Lambot, R. Fumeaux, E. Voirol-Baliguet, I. Blank
Authors from the NMC: 
Published in: 
Journal of Agricultural and Food Chemistry
Date of publication: 
2009/10
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics
Pages: 
2009; 57 (21): 9972-9978
DOI: 
10.1021/jf901673d
Publication data (text): 
2009

Fruit-surface flavonoid accumulation in tomato is controlled by a SlMYB12-regulated transcriptional network

Type of publication: 
Matching Publication
Authors: 
A. Adato, T. Mandel, S. Mintz-Oron, I. Venger, D. Levy, M. Yativ, E. Dominguez, Z. Wang, R.C.H. de Vos, R. Jetter, L. Schreiber, A. Heredia, I. Rogachev, A. Aharoni
Authors from the NMC: 
Published in: 
PLoS Genetics
Date of publication: 
2009/12
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics
Publisher: 
Public Library of Science
Pages: 
2009; 5 (12): e1000777
DOI: 
10.1371/journal.pgen.1000777
Publication data (text): 
2009

A role for differential glycoconjugation in the emission of phenylpropanoid volatiles from tomato fruit discovered using a metabolic data fusion approach

Type of publication: 
Matching Publication
Authors: 
Y.M. Tikunov, R.C.H. de Vos, A.M. González Paramás, R.D. Hall, A.G. Bovy
Authors from the NMC: 
Published in: 
Plant Physiology
Date of publication: 
2010/01
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

A role for differential glycoconjugation in the emission of phenylpropanoid volatiles from ripening tomato fruit (Solanum lycopersicum) upon fruit tissue disruption has been discovered in this study.

Pages: 
2010; 152 (1): 55–70
DOI: 
10.1104/pp.109.146670
Publication data (text): 
2010

Biochemical and molecular analysis of pink tomatoes: deregulated expression of the gene encoding transcription factor SlMYB12 leads to pink tomato fruit color

Type of publication: 
Matching Publication
Authors: 
A.R. Ballester, J. Molthoff, R.C.H. de Vos, B.T.L. Hekkert, Z. Orzaez, J.P. Fernández-Moreno, P. Tripodi, S. Grandillo, C. Martin, J. Heldens, M. Ykema, A. Granell, A.G. Bovy
Authors from the NMC: 
Published in: 
Plant Physiology
Date of publication: 
2010/01
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

The color of tomato fruit is mainly determined by carotenoids and flavonoids. Phenotypic analysis of an introgression line (IL) population derived from a cross between Solanum lycopersicum 'Moneyberg' and the wild species Solanum chmielewskii revealed three ILs with a pink fruit color. These lines had a homozygous S. chmielewskii introgression on the short arm of chromosome 1, consistent with the position of the y (yellow) mutation known to result in colorless epidermis, and hence pink-colored fruit, when combined with a red flesh.

Pages: 
2010; 152 (1): 71-84
DOI: 
10.1104/pp.109.147322
Publication data (text): 
2010

Carotenoid and fatty acid metabolism in light-stressed Dunaliella salina

Type of publication: 
Matching Publication
Authors: 
P.P. Lamers, C.C.W. van de Laak, P.S. Kaasenbrood, J. Lorier, M. Janssen, R.C.H. de Vos, R.J. Bino, R.H. Wijffels
Authors from the NMC: 
Published in: 
Biotechnology and Bioengineering
Date of publication: 
2010/07
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

beta-Carotene is overproduced in the alga Dunaliella salina in response to high light intensities. We have studied the effects of a sudden light increase on carotenoid and fatty acid metabolism using a flat panel photobioreactor that was run in turbidostat mode to ensure a constant light regime throughout the experiments. Upon the shift to an increased light intensity, beta-carotene production commenced immediately.

Publisher: 
Wiley
Pages: 
2010; 106 (4): 638-648
DOI: 
10.1002/bit.2
Publication data (text): 
2010

Plant molecular stress responses face climate change

Type of publication: 
Matching Publication
Authors: 
I. Ahuja, R.C.H. de Vos, A.M. Bones, R.D. Hall
Authors from the NMC: 
Published in: 
Trends in Plant Science
Date of publication: 
2010/12
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

Environmental stress factors such as drought, elevated temperature, salinity and rising CO₂ affect plant growth and pose a growing threat to sustainable agriculture. This has become a hot issue due to concerns about the effects of climate change on plant resources, biodiversity and global food security. Plant adaptation to stress involves key changes in the '-omic' architecture. Here, we present an overview of the physiological and molecular programs in stress adaptation focusing on how genes, proteins and metabolites change after individual and multiple environmental stresses.

Pages: 
2010;15 (12): 664-674
DOI: 
10.1016/j.tplants.2010.08.002
Publication data (text): 
2010

The effect of industrial food processing on potentially health-beneficial tomato antioxidants

Type of publication: 
Matching Publication
Authors: 
E. Capanoglu, J. Beekwilder, D. Boyacioglu, R.C.H. de Vos, R.D. Hall
Authors from the NMC: 
Published in: 
Critical Reviews in Food Science and Nutrition
Date of publication: 
2010/11
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

Increasing desires from both consumers and producers to understand better which nutritive components are present in our food and how these are influenced by industrial processing strategies is resulting in extra research involving the use of state-of-the-art technologies to generate novel biochemical information. In this review, attention has been focused on tomato as this is a product eaten right across the world both as fresh produce and after having been processed in a wide variety of ways.

Pages: 
2010; 50 (10): 919-930
DOI: 
10.1080/10408390903001503
Publication data (text): 
2010

From QTL to candidate gene: genetical genomics of simple and complex traits in potato using a pooling strategy

Type of publication: 
Matching Publication
Authors: 
B. Kloosterman, M. Oortwijn, J. UitdeWilligen, T. America, R.C.H. de Vos, R.G.F. Visser, C.W.B. Bachem
Authors from the NMC: 
Published in: 
BMC Genomics
Date of publication: 
2010/03
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics

Background

Pages: 
2010; 11: 158
DOI: 
10.1186/1471-2164-11-158
Publication data (text): 
2010

Strategies to optimise the flavonoid content of tomato fruit

Type of publication: 
Book chapter
Authors: 
A.G. Bovy, V. Gómez-Roldán, R.D. Hall
Authors from the NMC: 
Published in: 
Recent Advances in Polyphenol Research
Date of publication: 
2010/04
Status of the publication: 
Published/accepted
Source: 
Centre for BioSystems Genomics
Book: 
Recent Advances in Polyphenol Research
Publisher: 
Blackwell
Pages: 
2010; 2 (5): 138-162
DOI: 
10.1002/9781444323375.ch5
Publication data (text): 
2010