Plant associate projects

Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment

Type of publication: 
Matching Publication
Authors: 
S. Bernillon, B. Biais, C. Deborde and others
Authors from the NMC: 
Published in: 
Metabolomics
Date of publication: 
2013/02
Status of the publication: 
Published/accepted
Melon (Cucumis melo L.) is a global crop in terms of economic importance and nutritional quality. The aim of this study was to explore the variability in metabolite and elemental composition of several commercial varieties of melon in various environmental conditions. Volatile and non-volatile metabolites as well as mineral elements were profiled in the flesh of mature fruit, employing a range of complementary analytical technologies. More than 1,000 metabolite signatures and 19 mineral elements were determined.
Pages: 
2013; 9 (1): 57-77
DOI: 
10.1007/s11306-012-0429-1

Detoxification of α-tomatine by Cladosporium fulvum is required for full virulence on tomato

Type of publication: 
NMC Publication
Authors: 
B. Ökmen, D.W. Etalo, M.H. Joosten, H.J. Bouwmeester, R.C.H. de Vos, J. Collemare, P.J.G.M. de Wit
Authors from the NMC: 
Published in: 
The New Phytologist
Date of publication: 
2013/06
Status of the publication: 
Published/accepted

α-Tomatine is an antifungal glycoalkaloid that provides basal defense to tomato (Solanum lycopersicum). However, tomato pathogens overcome this basal defense barrier by the secretion of tomatinases that degrade α-tomatine into the less fungitoxic compounds β-tomatine and tomatidine. Although pathogenic on tomato, it has been reported that the biotrophic fungus Cladosporium fulvum is unable to detoxify α-tomatine. · Here, we present a functional analysis of the glycosyl hydrolase (GH10), CfTom1, which is orthologous to fungal tomatinases. · We show that C.

Pages: 
2013; 198 (4): 1203-1214
DOI: 
10.1111/nph.12208

Citrus phenylpropanoids and defence against pathogens. Part I: metabolic profiling in elicited fruits

Type of publication: 
Matching Publication
Authors: 
A.R. Ballester, M.T. Lafuente, R.C.H. de Vos, A.G. Bovy, L. González-Candelas
Authors from the NMC: 
Published in: 
Food Chemistry
Date of publication: 
2013/01
Status of the publication: 
Published/accepted

Penicillium spp. are among the major postharvest pathogens of citrus fruit. Induction of natural resistance in fruits constitutes one of the alternatives to chemical fungicides. Here, we investigated the involvement of the phenylpropanoid pathway in the induction of resistance in Navelate oranges by examining changes in the metabolic profile of upon eliciting citrus fruits. By using both HPLC-PDA-FD and HPLC-PDA-QTOF-MS allowed the identification of several compounds that seem to be relevant for induced resistance.

Pages: 
2013; 136 (1): 178-185
DOI: 
10.1016/j.foodchem.2012.07.114

Inhibitory activity of plumbagin produced by Drosera intermedia on food spoilage fungi

Type of publication: 
Matching Publication
Authors: 
T. Grevenstuk, S. Gonçalves, T. Domingos, C. Quintas, J.J.J. van der Hooft, J. Vervoort, A. Romano
Published in: 
Journal of the Science of Food and Agriculture
Date of publication: 
2012/06
Status of the publication: 
Published/accepted

The aim of this study was to investigate the growth-inhibiting efficacy of Drosera intermedia extracts (water, methanol and n-hexane) against four food spoilage yeasts and five filamentous fungi strains responsible for food deterioration and associated with mycotoxin production, in order to identify potential antimycotic agents.

Pages: 
2012; 92 (8), 1638-1642
DOI: 
10.1002/jsfa.5522

Activation of antioxidant response element in mouse primary cortical cultures with sesquiterpene lactones isolated from Tanacetum parthenium

Type of publication: 
Matching Publication
Authors: 
J.T. Fischedick, M. Standiford, D.A. Johnson, R.C.H. de Vos, S. Todorović, T. Banjanac, R. Verpoorte, J.A. Johnson
Authors from the NMC: 
Published in: 
Planta Medica
Date of publication: 
2012/11
Status of the publication: 
Published/accepted

Tanacetum parthenium produces biologically active sesquiterpene lactones (SL). Nuclear factor E2-related factor 2 (Nrf2) is a transcription factor known to activate a series of genes termed the antioxidant response element (ARE). Activation of Nrf2/ARE may be useful for the treatment of neurodegenerative disease. In this study we isolated 11 SL from T. parthenium with centrifugal partition chromatography and semipreparative HPLC. Compounds were screened in vitro for their ability to activate the ARE on primary mouse cortical cultures as well as for their toxicity towards the cultures.

Publisher: 
Georg Thieme Verlag
Pages: 
2012; 78: 1725–1730
DOI: 
10.1055/s-0032-1315241

Chemical identification strategies using liquid chromatography-photodiode array-solid-phase extraction-nuclear magnetic resonance/mass spectrometry

Type of publication: 
Matching Publication
Authors: 
S. Moco, J. Vervoort
Authors from the NMC: 
Published in: 
Plant Metabolomics
Date of publication: 
2012/08
Status of the publication: 
Published/accepted
Book: 
Plant Metabolomics
Publisher: 
Springer
Pages: 
287-316
DOI: 
10.1007/978-1-61779-594-7_17

Transportomics: screening for substrates of ABC transporters in body fluids using vesicular transport assays

Type of publication: 
Matching Publication
Authors: 
P. Krumpochova, S. Sapthu, J.F. Brouwers, M. de Haas, R.C.H. de Vos, P. Borst, K. van de Wetering
Authors from the NMC: 
Published in: 
The FASEB Journal
Date of publication: 
2012/02
Status of the publication: 
Published/accepted
Pages: 
2012; 26, 738-747
DOI: 
10.1096/fj.11-195743

Solid phase micro-extraction GC-MS analysis of natural volatile components in melon and rice

Type of publication: 
Matching Publication
Authors: 
H.A. Verhoeven, H. Jonker, R.C.H. de Vos, R.D. Hall
Authors from the NMC: 
Published in: 
Book Humana: Methods for Plant metabolomics
Date of publication: 
2012/06
Status of the publication: 
Published/accepted
Book: 
N.G. Hardy and R.D. Hall (Eds): Methods for Plant metabolomics
Publisher: 
Springer-Humana
Pages: 
85-99
DOI: 
10.1007/978-1-61779-594-7_6

MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data

Type of publication: 
Matching Publication
Authors: 
Y.M. Tikunov, S. Laptenok, R.D. Hall, A. Bovy, R.C.H. de Vos
Authors from the NMC: 
Published in: 
Metabolomics
Date of publication: 
2012/08
Status of the publication: 
Published/accepted

Mass peak alignment (ion-wise alignment) has recently become a popular method for unsupervised data analysis in untargeted metabolic profiling. Here we present MSClust-a software tool for analysis GC-MS and LC-MS datasets derived from untargeted profiling. MSClust performs data reduction using unsupervised clustering and extraction of putative metabolite mass spectra from ion-wise chromatographic alignment data.

Pages: 
2012; 8 (4), 714-718
DOI: 
10.1007/s11306-011-0368-2

High-performance liquid chromatography-mass spectrometry analysis of plant metabolites in brassicaceae

Type of publication: 
Matching Publication
Authors: 
R.C.H. de Vos, B. Schipper, R.D. Hall
Authors from the NMC: 
Published in: 
Book Humana: Methods for Plant metabolomics
Date of publication: 
2012/01
Status of the publication: 
Published/accepted
Book: 
N.G. Hardy and R.D. Hall (Eds): Methods for Plant metabolomics
Publisher: 
Springer-Humana
Pages: 
111-128
DOI: 
10.1007/978-1-61779-594-7_8